rs32011179 SNP Detail

Summary

• ID
  rs32011179
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106105862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTTTCA TTGACAAGAG
  CTTTCCACAA ATCTTGTACT CTGAATTTAA AATCTGAGAT TTTTAAGATC CTTCCCCTAG
  ATTCCTTCTG GGCGTTTGAA AGAATTACAT TCCGTAGTTC CTGGACATTG TAGCTATAGT
  GAGGATTGGG AGGGGCCATT GGGGGATTGC CATCCCAGAG GTGAGCAAAG TAGTAGATAT
  S
  GGAAGTGGCA TCAAACTTAA TTACATCACT AAAGTGAGTT ATGTTTGAGC AGTCTTCCAA
  CTCTGCAGCC AATGCTGTCA TTTCATCCAG TTTCTGTTCA AGTCTCCTTC CTTCTTCCAT
  AGTTTGGTCT TTTGCTGTAA TTTCTCCCAC ATTTTGATGG ACAAAGAGGC AACTGGGAGA
  GATTTTTACT TGTTTCATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47115339	NES11602389	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	C	G	G		G
ss322371920	CHEV_7_113650169	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32011179					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47115339	NES11602389	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106105862 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74129	transcription start site region 74129	1700 bp upstream
Tssr74130	transcription start site region 74130	1651 bp upstream
Tssr74131	transcription start site region 74131	1440 bp upstream
Tssr74132	transcription start site region 74132	1264 bp upstream
Tssr74133	transcription start site region 74133	607 bp upstream
Tssr74134	transcription start site region 74134	352 bp upstream
Tssr74135	transcription start site region 74135	272 bp upstream
Tssr74136	transcription start site region 74136	226 bp upstream
Tssr74137	transcription start site region 74137	160 bp upstream
Tssr74138	transcription start site region 74138	122 bp upstream
Tssr74139	transcription start site region 74139	80 bp upstream
Tssr74140	transcription start site region 74140	27 bp upstream
Tssr74141	transcription start site region 74141	348 bp downstream
Tssr74142	transcription start site region 74142	491 bp downstream