rs32011249 SNP Detail

Summary

• ID
  rs32011249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135693273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT ACTTCCCATT GATCCATCAG
  R
  ATTTCTCTCT CCCCACTTTA TACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45095911	mCV23239871	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss145545533	ENSMUSSNP1982521	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319993136	CHEV_1_137662112	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32011249					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135693273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	4 bp proximal
Gm70736	predicted gene, 70736	540 bp downstream
Phlda3	pleckstrin homology like domain, family A, member 3	584 bp upstream
Rr372092	regulatory region 372092	within coordinates
Rr419268	regulatory region 419268	1308 bp distal
Rr419269	regulatory region 419269	94 bp proximal
Tssr223	transcription start site region 223	535 bp upstream
Tssr224	transcription start site region 224	654 bp upstream
Tssr8974	transcription start site region 8974	550 bp upstream
Tssr8975	transcription start site region 8975	672 bp upstream
Tssr8976	transcription start site region 8976	683 bp upstream
Tssr8977	transcription start site region 8977	702 bp upstream
Tssr8978	transcription start site region 8978	706 bp upstream