rs32011577 SNP Detail

Summary

• ID
  rs32011577
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118266463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GACCCGGCTA GTTCTGTACC
  S
  GGCAGGAACC GGAAGTTGTT GGGAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45596368	mCV22652910	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss147307468	ENSMUSSNP875019	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321283065	CHEV_4_118081871	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32011577					SNP	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118266463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14683	CpG island 14683	within coordinates
Med8	mediator complex subunit 8	71 bp upstream
Rr398422	regulatory region 398422	within coordinates
Rr598388	regulatory region 598388	4 bp distal
Rr598389	regulatory region 598389	within coordinates
Rr598390	regulatory region 598390	111 bp proximal
Szt2	SZT2 subunit of KICSTOR complex	within coordinates
Tssr1279	transcription start site region 1279	119 bp upstream
Tssr38654	transcription start site region 38654	65 bp upstream
Tssr38655	transcription start site region 38655	1604 bp upstream
Tssr43049	transcription start site region 43049	within coordinates