rs32011965 SNP Detail

Summary

• ID
  rs32011965
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106106184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGTAGAAT GTCCTGAATC TCTGAGGAAT TCTCACCAAA
  AATATTGATC AGAGTCAAAT TTCCAAGGCC AATCACAAAT GTTGCCAACT CATTGTCCCT
  M
  TTCTGGGATT TGTTGTTGTG TTCTGGAGCC CAAAGCCCTT CTGTGTCTAC AACAAGCACA
  TAATCAAAGC CAAGTTCTTC TGTACATGTC TCTTCCACT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47115345	NES11602391	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	C	C	C	A		C	A	A	C		A
ss145614869	ENSMUSSNP2024943	ENSEMBL	ENSEMBL_Sanger	f	SNP	A						A
ss322371923	CHEV_7_113650491	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32011965					SNP	A	A	A	A	A	C	?	C	A	A	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47115345	NES11602391	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106106184 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74130	transcription start site region 74130	1973 bp upstream
Tssr74131	transcription start site region 74131	1762 bp upstream
Tssr74132	transcription start site region 74132	1586 bp upstream
Tssr74133	transcription start site region 74133	929 bp upstream
Tssr74134	transcription start site region 74134	674 bp upstream
Tssr74135	transcription start site region 74135	594 bp upstream
Tssr74136	transcription start site region 74136	548 bp upstream
Tssr74137	transcription start site region 74137	482 bp upstream
Tssr74138	transcription start site region 74138	444 bp upstream
Tssr74139	transcription start site region 74139	402 bp upstream
Tssr74140	transcription start site region 74140	349 bp upstream
Tssr74141	transcription start site region 74141	26 bp downstream
Tssr74142	transcription start site region 74142	169 bp downstream