rs32012089 SNP Detail

Summary

• ID
  rs32012089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24715137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTG TAGCAATTCA TAATATGTTA
  W
  CAAAAATGTA GCCCAATAGT GCAGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45806748	mCV22685917	ABI	CRAMUS_MOUSE	f	SNP		A	T		T	A
ss47615175	NES10285788	PERLEGEN	MM_PANEL2	f	SNP	A		T	A			A	A		A	A	T
ss148095155	ENSMUSSNP1326978	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T			A
ss321495918	CHEV_5_24015957	CHEVERUD	SCREENING_POP	f	SNP									A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs32012089					SNP	A	A	T	A	T	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47615175	NES10285788	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24715137 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608340	regulatory region 608340	1528 bp distal
Rr608341	regulatory region 608341	605 bp proximal
Rr608342	regulatory region 608342	678 bp proximal
Rr608343	regulatory region 608343	858 bp proximal