rs32012560 SNP Detail

Summary

• ID
  rs32012560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106106758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGATGGCT TCTATCTGCT TGTGCCAGAG TGTCAGGGAG
  TTGCTCTTCT GTGCTTTTTG CTTTTCTGTT TGTACTATTA ACCACAAAGA TCTCTGCTTT
  Y
  TGTGTAACTT CTCCAGGTGT TCTATAGTCA GATTGTCAAA AAACAGAGTC AGCCACTGCA
  AAAAGTAGAG TTTCTTATGC GTTTCTGAAT AATCTTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47115360	NES11602397	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	C	T		C	C	T	T
ss145614897	ENSMUSSNP2945732	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32012560					SNP	C	C	C	C	C	C	T	C	T	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47115360	NES11602397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106106758 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74133	transcription start site region 74133	1503 bp upstream
Tssr74134	transcription start site region 74134	1248 bp upstream
Tssr74135	transcription start site region 74135	1168 bp upstream
Tssr74136	transcription start site region 74136	1122 bp upstream
Tssr74137	transcription start site region 74137	1056 bp upstream
Tssr74138	transcription start site region 74138	1018 bp upstream
Tssr74139	transcription start site region 74139	976 bp upstream
Tssr74140	transcription start site region 74140	923 bp upstream
Tssr74141	transcription start site region 74141	533 bp upstream
Tssr74142	transcription start site region 74142	379 bp upstream
Tssr74143	transcription start site region 74143	1660 bp downstream
Tssr74144	transcription start site region 74144	1850 bp downstream
Tssr74145	transcription start site region 74145	1955 bp downstream