rs32013168 SNP Detail

Summary

• ID
  rs32013168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10106645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACG CAGCTTGCTT TAGAAACAGC
  Y
  AAGTAATCTG TGTGGGGCAC TCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45096143	mCV23215936	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	T
ss148572926	ENSMUSSNP4580394	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss319632122	CHEV_1_10026501	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32013168					SNP	C	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10106645 () rs orientation: forward

Symbol	Name	Function Class
Cops5	COP9 signalosome subunit 5	within coordinates
Cpgi31	CpG island 31	1135 bp proximal
Cspp1	centrosome and spindle pole associated protein 1	1567 bp upstream
Rr407692	regulatory region 407692	1475 bp proximal
Rr407693	regulatory region 407693	1697 bp proximal
Rr407694	regulatory region 407694	1853 bp proximal
Tssr4	transcription start site region 4	1788 bp upstream
Tssr10955	transcription start site region 10955	1463 bp downstream
Tssr10956	transcription start site region 10956	1502 bp downstream
Tssr10957	transcription start site region 10957	1512 bp downstream
Tssr10958	transcription start site region 10958	1686 bp downstream