rs32013231 SNP Detail

Summary

• ID
  rs32013231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148890024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCG CCGGAGGTGG GGGCTCTCTC
  Y
  AGGGATAGGA GAGGATTGGA CGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45597509	mCV24952152	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148019830	ENSMUSSNP4221156	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321423039	CHEV_4_148179676	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32013231					SNP	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148890024 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	within coordinates
Cpgi15311	CpG island 15311	within coordinates
Rr100549	regulatory region 100549	within coordinates
Rr407230	regulatory region 407230	585 bp distal
Tssr1379	transcription start site region 1379	1226 bp downstream
Tssr40301	transcription start site region 40301	1194 bp downstream
Tssr40302	transcription start site region 40302	1128 bp downstream
Tssr40303	transcription start site region 40303	1073 bp downstream