rs32013366 SNP Detail

Summary

• ID
  rs32013366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171122809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCT TGTTTGTTTT TTAAAGGACA
  Y
  TGGGTCCTAT ATACCACAGA CTTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45096623	mCV22659542	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss119997249	PARCsnp_1.12701	PARC_SEQ	INBRED	f	SNP			T	C
ss119999069	PARCsnp_1.01803	PARC_SEQ	INBRED	f	SNP			T	C
ss146159449	ENSMUSSNP3368994	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320117862	CHEV_1_173225367	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32013366					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171122809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	354 bp distal
Rr372447	regulatory region 372447	within coordinates
Tssr15031	transcription start site region 15031	449 bp upstream
Tssr15032	transcription start site region 15032	397 bp upstream
Tssr15033	transcription start site region 15033	225 bp upstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	234 bp upstream