rs32013416 SNP Detail

Summary

• ID
  rs32013416
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106106832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATTAACCA CAAAGATCTC TGCTTTTTGT GTAACTTCTC
  CAGGTGTTCT ATAGTCAGAT TGTCAAAAAA CAGAGTCAGC CACTGCAAAA AGTAGAGTTT
  S
  TTATGCGTTT CTGAATAATC TTGGAGGAGT TCGAGAACAG AGCGCATTAA ATCATTGAGA
  GGAAAGGCTT TTTCCAACTG CTGACGTCGA ATTATTCTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47115366	NES11602401	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G		G	C	G
ss145614901	ENSMUSSNP1252533	ENSEMBL	ENSEMBL_Sanger	f	SNP	G					G				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32013416					SNP	G	G	G	G	G	G	C	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47115366	NES11602401	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106106832 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74133	transcription start site region 74133	1577 bp upstream
Tssr74134	transcription start site region 74134	1322 bp upstream
Tssr74135	transcription start site region 74135	1242 bp upstream
Tssr74136	transcription start site region 74136	1196 bp upstream
Tssr74137	transcription start site region 74137	1130 bp upstream
Tssr74138	transcription start site region 74138	1092 bp upstream
Tssr74139	transcription start site region 74139	1050 bp upstream
Tssr74140	transcription start site region 74140	997 bp upstream
Tssr74141	transcription start site region 74141	607 bp upstream
Tssr74142	transcription start site region 74142	453 bp upstream
Tssr74143	transcription start site region 74143	1586 bp downstream
Tssr74144	transcription start site region 74144	1776 bp downstream
Tssr74145	transcription start site region 74145	1881 bp downstream