rs32013478 SNP Detail

Summary

• ID
  rs32013478
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAGCGTGT AAAGGGAATC TATTAATTCC CCAAACACAT
  CAGGCTTATT TTGTTCTGTT ATAGAGCCAA ATGTATGTTT CTCCAGGTTA GCTCTGTTTC
  S
  ATTGAATTTA GGGCAGGTGG CTCGCATGTC TCCAGCTAAT TTTTGAGCTA TTATTTTCCA
  TATGGTGGCA GAGATAGCAG GAGTGAGCTT GCGCCATAGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47115306	NES11602375	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32013478					SNP	C	C	C	C	C	C	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47115306	NES11602375	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104494 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1649 bp downstream
Tssr74117	transcription start site region 74117	1761 bp upstream
Tssr74118	transcription start site region 74118	1714 bp upstream
Tssr74119	transcription start site region 74119	1316 bp upstream
Tssr74120	transcription start site region 74120	1299 bp upstream
Tssr74121	transcription start site region 74121	1236 bp upstream
Tssr74122	transcription start site region 74122	1219 bp upstream
Tssr74123	transcription start site region 74123	1186 bp upstream
Tssr74124	transcription start site region 74124	1141 bp upstream
Tssr74125	transcription start site region 74125	1130 bp upstream
Tssr74126	transcription start site region 74126	1094 bp upstream
Tssr74127	transcription start site region 74127	943 bp upstream
Tssr74128	transcription start site region 74128	863 bp upstream
Tssr74129	transcription start site region 74129	332 bp upstream
Tssr74130	transcription start site region 74130	283 bp upstream
Tssr74131	transcription start site region 74131	72 bp upstream
Tssr74132	transcription start site region 74132	54 bp downstream
Tssr74133	transcription start site region 74133	753 bp downstream
Tssr74134	transcription start site region 74134	980 bp downstream
Tssr74135	transcription start site region 74135	1063 bp downstream
Tssr74136	transcription start site region 74136	1131 bp downstream
Tssr74137	transcription start site region 74137	1197 bp downstream
Tssr74138	transcription start site region 74138	1227 bp downstream
Tssr74139	transcription start site region 74139	1261 bp downstream
Tssr74140	transcription start site region 74140	1316 bp downstream
Tssr74141	transcription start site region 74141	1716 bp downstream
Tssr74142	transcription start site region 74142	1859 bp downstream