rs32013481 SNP Detail

Summary

• ID
  rs32013481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTGATG TCACCTAAAC
  TTAGGTTTAA AAAAGTTTTT ATTTTTTCAT TTCCTTTTTC TGAACAGTAA CTCTTAATGT
  GGTATCTAAG GCAAAGCGTG TAAAGGGAAT CTATTAATTC CCCAAACACA TCAGGCTTAT
  TTTGTTCTGT TATAGAGCCA AATGTATGTT TCTCCAGGTT AGCTCTGTTT CGATTGAATT
  Y
  AGGGCAGGTG GCTCGCATGT CTCCAGCTAA TTTTTGAGCT ATTATTTTCC ATATGGTGGC
  AGAGATAGCA GGAGTGAGCT TGCGCCATAG GAAGTCAACA AAGGATGTGA TTGCGGTGGC
  ACCTTGGCAG GAGATCTTAA AACTAATAAA AAAATGGTCT TTCTTTCTCT CCAGATAGTT
  CACAGGGTCA TTTGCAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47115309	NES11602376	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T		T	C		T	C	C	T		C
ss145614778	ENSMUSSNP1133043	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss322371909	CHEV_7_113648810	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32013481					SNP	C	C	C	C	C	C	T	C	T	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47115309	NES11602376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104503 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1658 bp downstream
Tssr74117	transcription start site region 74117	1770 bp upstream
Tssr74118	transcription start site region 74118	1723 bp upstream
Tssr74119	transcription start site region 74119	1325 bp upstream
Tssr74120	transcription start site region 74120	1308 bp upstream
Tssr74121	transcription start site region 74121	1245 bp upstream
Tssr74122	transcription start site region 74122	1228 bp upstream
Tssr74123	transcription start site region 74123	1195 bp upstream
Tssr74124	transcription start site region 74124	1150 bp upstream
Tssr74125	transcription start site region 74125	1139 bp upstream
Tssr74126	transcription start site region 74126	1103 bp upstream
Tssr74127	transcription start site region 74127	952 bp upstream
Tssr74128	transcription start site region 74128	872 bp upstream
Tssr74129	transcription start site region 74129	341 bp upstream
Tssr74130	transcription start site region 74130	292 bp upstream
Tssr74131	transcription start site region 74131	81 bp upstream
Tssr74132	transcription start site region 74132	45 bp downstream
Tssr74133	transcription start site region 74133	744 bp downstream
Tssr74134	transcription start site region 74134	971 bp downstream
Tssr74135	transcription start site region 74135	1054 bp downstream
Tssr74136	transcription start site region 74136	1122 bp downstream
Tssr74137	transcription start site region 74137	1188 bp downstream
Tssr74138	transcription start site region 74138	1218 bp downstream
Tssr74139	transcription start site region 74139	1252 bp downstream
Tssr74140	transcription start site region 74140	1307 bp downstream
Tssr74141	transcription start site region 74141	1707 bp downstream
Tssr74142	transcription start site region 74142	1850 bp downstream