rs32013973 SNP Detail

Summary

• ID
  rs32013973
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37514097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTAATA TAGTGAGTCA
  GAAAGAGGAA GTTAAAAGGC TAAAAAAATT AAAAAAAAAA AAAAAAGGCG ACTACTTCTT
  CTTCATTTGA ATGATCTGTC CTAGCTTTTC TGTCTCCTCT CATCTGCAGA TGACAGCAGA
  CATTCCCACA CAGGCCCCAG CACTCTTTCA GTTCAAATCA CTTCATAAAC TCACCTCTTC
  W
  GGAACCTAGT GGGATAGCCT AGTCCAGAAC TTGCCTGGAT CATGACAACA GTCCCTATCC
  TTAATAAAGC CGCCAGTGGG TGCCTTTCAA ATGGCAGGCC TTGACACCTC AGCAAGGTCT
  GTGACTAAGG TGCAATTGTG AGACATTCAA GCGGAGATGC TATCGCACAG GTGACCAGGA
  CTCATAAGAC TGTACAGATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45096441	mCV23155977	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss148941565	ENSMUSSNP1915343	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A		T
ss319691774	CHEV_1_37531861	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs32013973					SNP	T	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37514097 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	72 bp downstream
Rr409535	regulatory region 409535	1313 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	439 bp downstream