rs32014210 SNP Detail

Summary

• ID
  rs32014210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36727798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGCGATC TGTAGACCAT
  TCCCTACCCC ACGTTTTCTT GCTGCTTGCT CTCCACTCCC GGTTCCCTGC TCCCCTGATT
  CTGCCGCCAC CACGTACTTT CCATCCGCCC CTCACTCTCT GTTCAGGGCG GTGCTGCCTG
  ACAATCCTGA GCTCTCCACA TTCCCCCTTG CTGTCTCCCT CCCTGTTTGA CCTGACTCCA
  Y
  AGCAGCCAGT TGACTAGAGC TCTGGCAGCA AGGACACAGC TGCAGCTACG GCCCCCCAGC
  CCCGCCTACT CAACCCTGCC ACCCAGTGCT CTGTGGCACG GCGTGATCTC TCGCGCGCGC
  CCCACCGCCC TGAGTGCCTG GAGCACACTT GCTCTCCAAC CTGAGCAGAG TTGCTAGAAG
  ACAGAACGCT GCTTCAGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39352068	mCV23782631	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss63456912	NES17003091	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	C
ss147608215	ENSMUSSNP2557190	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32014210					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63456912	NES17003091	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36727798 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	within coordinates
Cpgi7034	CpG island 7034	within coordinates
Gm41297	predicted gene, 41297	within coordinates
Tssr131079	transcription start site region 131079	1229 bp downstream
Tssr131080	transcription start site region 131080	1175 bp downstream
Tssr131081	transcription start site region 131081	1153 bp downstream
Tssr131082	transcription start site region 131082	858 bp downstream
Tssr131083	transcription start site region 131083	682 bp downstream
Tssr131084	transcription start site region 131084	613 bp downstream