rs32014317 SNP Detail

Summary

• ID
  rs32014317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTAATTC CCCAAACACA
  TCAGGCTTAT TTTGTTCTGT TATAGAGCCA AATGTATGTT TCTCCAGGTT AGCTCTGTTT
  CGATTGAATT TAGGGCAGGT GGCTCGCATG TCTCCAGCTA ATTTTTGAGC TATTATTTTC
  CATATGGTGG CAGAGATAGC AGGAGTGAGC TTGCGCCATA GGAAGTCAAC AAAGGATGTG
  R
  TTGCGGTGGC ACCTTGGCAG GAGATCTTAA AACTAATAAA AAAATGGTCT TTCTTTCTCT
  CCAGATAGTT CACAGGGTCA TTTGCAGTCT TGAATGCCTC GTGCATTTTC TTGAAATCCT
  TGGATGCTCT TTGGAATAAG TACAAGGATA AGTCAATGAT GTAGTCTCTG GTAAATGTGT
  AGTCTCCCTC ACAGGGTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47115315	NES11602378	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
ss145614787	ENSMUSSNP1172942	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32014317					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47115315	NES11602378	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104613 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1768 bp downstream
Tssr74117	transcription start site region 74117	1880 bp upstream
Tssr74118	transcription start site region 74118	1833 bp upstream
Tssr74119	transcription start site region 74119	1435 bp upstream
Tssr74120	transcription start site region 74120	1418 bp upstream
Tssr74121	transcription start site region 74121	1355 bp upstream
Tssr74122	transcription start site region 74122	1338 bp upstream
Tssr74123	transcription start site region 74123	1305 bp upstream
Tssr74124	transcription start site region 74124	1260 bp upstream
Tssr74125	transcription start site region 74125	1249 bp upstream
Tssr74126	transcription start site region 74126	1213 bp upstream
Tssr74127	transcription start site region 74127	1062 bp upstream
Tssr74128	transcription start site region 74128	982 bp upstream
Tssr74129	transcription start site region 74129	451 bp upstream
Tssr74130	transcription start site region 74130	402 bp upstream
Tssr74131	transcription start site region 74131	191 bp upstream
Tssr74132	transcription start site region 74132	15 bp upstream
Tssr74133	transcription start site region 74133	634 bp downstream
Tssr74134	transcription start site region 74134	861 bp downstream
Tssr74135	transcription start site region 74135	944 bp downstream
Tssr74136	transcription start site region 74136	1012 bp downstream
Tssr74137	transcription start site region 74137	1078 bp downstream
Tssr74138	transcription start site region 74138	1108 bp downstream
Tssr74139	transcription start site region 74139	1142 bp downstream
Tssr74140	transcription start site region 74140	1197 bp downstream
Tssr74141	transcription start site region 74141	1597 bp downstream
Tssr74142	transcription start site region 74142	1740 bp downstream