rs32014390 SNP Detail

Summary

• ID
  rs32014390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:91077550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTGATT TAAAGAAGTG
  AAAGATAGCT ACATGGTGAT TGTCACATCA CAACGGGTCA CTTGTGTGTT CGTTACTAGT
  CCTCTCTGTG CTTCAGCTTT GCCTTCTATC TGTAAAATGG AAACGATGCT ATTCTGGGAA
  GTGGGTGTAG ACATTAAATA AAATAGTCAG TTGTTTAAAA AAAAACATTG TATATAGAAG
  Y
  CTGCAAACCT CCCTGCTAGA ATATGTGCCC CAATGTCTTG TGATCGTTAT TGTTCATTAG
  ACATGAGTCA AAGAATTGCC TTTACCAAGA ATGATTTTTA AAAAACAGTA TTCTTTTGAG
  CTCTTTGGCA TACATATATT AAATCTAAGA ATTGTTTGTT ATCCAGAGGT CTTTTATTTG
  CATCCAACTT AACAGATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48114205	NES12054916	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32014390					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48114205	NES12054916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:91077550 () rs orientation: forward

Symbol	Name	Function Class
Abcd2	ATP-binding cassette, sub-family D member 2	1548 bp upstream
Rr507988	regulatory region 507988	1058 bp distal
Tssr135947	transcription start site region 135947	1946 bp upstream
Tssr135948	transcription start site region 135948	1915 bp upstream
Tssr135949	transcription start site region 135949	1892 bp upstream
Tssr135950	transcription start site region 135950	1822 bp upstream
Tssr135951	transcription start site region 135951	1625 bp upstream
Tssr135952	transcription start site region 135952	1522 bp upstream
Tssr135953	transcription start site region 135953	1320 bp upstream
Tssr135954	transcription start site region 135954	1297 bp upstream