rs32016789 SNP Detail

Summary

• ID
  rs32016789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126387547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCCCAG GCAGCATCTG
  CTCCTGGAGG GCTGATGGCC CTGCTGGTCT GACCCTGAGG CCCAGTGTGA TTTCCAGCTG
  CCCAAGCGTG AGAATGCTAC TGACAGGCTG CACAACCCTG CCGCTTCCCC AGTAGCCAGA
  CGTGACTCTG CTGTCCCACT CACGGATGAC TCCAAGCGGA ATCCCTTGGG CGCAGTTGGG
  Y
  AAGAGACATT TTCCACCAGT GGCCTTTGGA GCATTGCTTT CACGCTGAAA GTTTCTGAAG
  CACCTCCCTT ACTCACAGAC CAGTGTTCAC ATCAGTGTTG TGTGGCCACT GCCTGTCAAG
  GGAAGCACTC CATTAAGGCC CCAGAAGAAA ATAAGTCAAC TCCCAGGAAG GCCCTGAAGC
  TTACAAGACT TGCAAGGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47616070	NES11170830	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	C	T	C		T
ss322860906	CHEV_8_128184708	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32016789					SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616070	NES11170830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126387547 () rs orientation: forward

Symbol	Name	Function Class
D8Ertd620e	DNA segment, Chr 8, ERATO Doi 620, expressed	736 bp proximal
Gm30871	predicted gene, 30871	within coordinates
Rr180110	regulatory region 180110	1347 bp distal
Rr180111	regulatory region 180111	1654 bp proximal
Rr183380	regulatory region 183380	within coordinates