rs32017291 SNP Detail

Summary

• ID
  rs32017291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24656587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTGCTGC AGCACTAAAA GAAAGAGGGT GGCGCCCCTG
  GGCGAGCTTC TCCGCCAATC AGTCCCACTT ATCAGCACCC TCAGGCACAG AGAACAGTTC
  Y
  GAGTAGCCCA AGGATTCCAC ACGGGCCTAG AGCGACGTAG AGAGGTAGCA ATGACAGCTG
  GCCGGACGTG GGGACAGCGT GATCGTGTCC CCAGGCGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47615493	NES10287497	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	C		T	C	C		C
ss321495784	CHEV_5_23957407	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32017291					SNP	T	T	T	T	T	T	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47615493	NES10287497	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24656587 () rs orientation: forward

Symbol	Name	Function Class
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	588 bp upstream
Cpgi15603	CpG island 15603	within coordinates
Gm10472	predicted gene 10472	within coordinates
Rr608324	regulatory region 608324	98 bp proximal
Rr608325	regulatory region 608325	1504 bp proximal
Rr608326	regulatory region 608326	1975 bp proximal
Tssr45426	transcription start site region 45426	348 bp upstream
Tssr45427	transcription start site region 45427	384 bp upstream
Tssr50327	transcription start site region 50327	113 bp downstream