rs32018309 SNP Detail

Summary

• ID
  rs32018309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24549749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCCAAGA GGAGGGGGGC
  ACAGCAGGCA GGAAGGGAGG CAGCAGGGAG GTGGGGACAA AGAGCAAAGA CAATAGCGAC
  AATAGCGGGA CCAGGAAGAG GAAGAGCTAG ATCTCCCCCA CCCCCACCAC GGCAGGCAGT
  GGAGGGCAAG GTGTGTACGC AGCCAGCACC TGCTGTCTGC GGTCCCTTCA CAGAAATGTC
  R
  CATCCTGCCA GGCCTGCACT ACAGGGTTCT GCTGTTCCCA GTTCCATTCT GGTCCTCGGT
  CTGTCTTAAG GGGCATCATC ACACGGCCAG TGAACTGGGC ACACTCTGTC TCCTCCTCCA
  CCCACACTCC CCCAGTCTAG CTTTCCTTCC TCCCAGCAGC CCCGGCAACT AAATAATGGG
  GCTGTCTGGC TCCAGAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45781743	mCV25227517	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss47616429	NES10290923	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32018309					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616429	NES10290923	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24549749 () rs orientation: forward

Symbol	Name	Function Class
Gm71601	predicted gene, 71601	164 bp upstream
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50307	transcription start site region 50307	207 bp upstream
Tssr50308	transcription start site region 50308	184 bp upstream
Tssr50309	transcription start site region 50309	165 bp upstream