rs32019114 SNP Detail

Summary

• ID
  rs32019114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24548937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG CAGGGGCAGA GCAGGACCTC
  Y
  GACTTAAGTG AGCAGGGAAG GCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss45752178	mCV25227508	ABI	CRAMUS_MOUSE	f	SNP		C					C	T
ss47616435	NES10290921	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C		T	C	T	T
ss148091791	ENSMUSSNP4454923	ENSEMBL	ENSEMBL_Sanger	f	SNP								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs32019114					SNP	T	C	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616435	NES10290921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24548937 () rs orientation: forward

Symbol	Name	Function Class
Gm71601	predicted gene, 71601	85 bp downstream
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50307	transcription start site region 50307	590 bp downstream
Tssr50308	transcription start site region 50308	611 bp downstream
Tssr50309	transcription start site region 50309	633 bp downstream