rs32019117 SNP Detail

Summary

• ID
  rs32019117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24548892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATTGCTT TGGCCCCATG
  GAAAAGCCCT AAGTTTAAGG CCTTGGCTTC TTTTAGGAAG GCTCCAGGCT GCTTCCCATG
  AACAGAGCAC AGAAACAGCT AGGCAACCAA CCTCTGACCT CTGACCTCTG CCTTCCACCT
  CAAAACCTCC CCCTTCAGAG AAAGCATCTT TTCACCTTCT CAGAGGACAC ATGACTGGGA
  Y
  CTGTCTGATA GGAGAGAGCC ACAGCAGGGG CAGAGCAGGA CCTCCGACTT AAGTGAGCAG
  GGAAGGCAGA GAAGAGAGAA GATCAGATCT AATGGCCTGG GTTGTAAAGG GTGATGAAAT
  GCCCAGAAAT TGGAGGCTGG TACCACCAGG GTCAGCCTGA GCACCTGAAA GACCAGGGTG
  TGAGTCAGGG TACAGCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47616438	NES10290920	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32019117					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616438	NES10290920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24548892 () rs orientation: forward

Symbol	Name	Function Class
Gm71601	predicted gene, 71601	130 bp downstream
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50307	transcription start site region 50307	635 bp downstream
Tssr50308	transcription start site region 50308	656 bp downstream
Tssr50309	transcription start site region 50309	678 bp downstream