rs32019865 SNP Detail

Summary

• ID
  rs32019865
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24599190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAACTCTC AGGTCTGTTT TCACATATTC CTTCTCACGA
  AACCACCACT TCCTGTGATG CCAGGGAGCA TAGAGATTGT CTGGAACAAC TCTAGAGAAA
  S
  GGCTCAAGGT CAGAAGCGCC AGGACGTCCT CTAATGTGAG AATGAACGTC GCACAACCTC
  TGACCCGCAC CTGACTTCAG GCCACTGAGC AAATAGCTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss47616009	NES10289285	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	C		C	C	C
ss148092997	ENSMUSSNP2434208	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		C
ss321495653	CHEV_5_23900010	CHEVERUD	SCREENING_POP	f	SNP						C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs32019865					SNP	G	G	G	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616009	NES10289285	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24599190 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	44 bp proximal
Rr112283	regulatory region 112283	590 bp distal
Rr124925	regulatory region 124925	within coordinates
Rr398998	regulatory region 398998	483 bp downstream
Rr398999	regulatory region 398999	within coordinates
Tssr45411	transcription start site region 45411	528 bp downstream
Tssr45412	transcription start site region 45412	196 bp upstream
Tssr50318	transcription start site region 50318	1698 bp upstream
Tssr50319	transcription start site region 50319	1494 bp upstream