rs32019868 SNP Detail

Summary

• ID
  rs32019868
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24598422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCCCCAAA CTCAAGCAAA TTCTGGCTCA TTGCTCTGTC
  TAGTTTCACT CTGCTCATTC CAGAGCATGA CTTTGCGACC CTCAGCTCAA GAAAAATTGA
  R
  TCCCGGAAGC ACCACCAATA AATGACAATG ATACTAGTAA CATAACAATG TTCAAATGTC
  CAGATGGATT ACCAGAGAGT AAATGTGAGC TAGAAACAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47616012	NES10289345	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A		A	G	A	A		G
ss321495651	CHEV_5_23899242	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32019868					SNP	G	G	G	G	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616012	NES10289345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24598422 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	239 bp upstream
Atg9b	autophagy related 9B	1281 bp upstream
Cpgi15597	CpG island 15597	812 bp proximal
Rr112283	regulatory region 112283	within coordinates
Rr124925	regulatory region 124925	378 bp proximal
Rr398998	regulatory region 398998	within coordinates
Rr398999	regulatory region 398999	745 bp upstream
Tssr45411	transcription start site region 45411	216 bp upstream
Tssr45412	transcription start site region 45412	964 bp upstream
Tssr50315	transcription start site region 50315	1463 bp upstream
Tssr50316	transcription start site region 50316	1417 bp upstream
Tssr50317	transcription start site region 50317	1393 bp upstream
Tssr50318	transcription start site region 50318	930 bp upstream
Tssr50319	transcription start site region 50319	726 bp upstream