rs32019871 SNP Detail

Summary

• ID
  rs32019871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24598064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCCCAAG GCCATGAGTC
  ACCAACTGCC CTACTGAAGC CCATGCCTGA GATATTGACT TATGGAGCAG GTGTCAGGGC
  CTCCAGCGAT CAAGCCAGTA TCTCAGAGGC GGAGAGGAAA ACTGTGCTTC CTAGAGCATT
  TCCTGGAGGA GCGTGGAGGA CATCCATGGA ACATCCCACA GGTTTATCCC AGACTGCCTG
  R
  TTTTCTTATA TAACAAGAGT TCATGACTCC CATACTTTTG TGTCTAGGTA AGGTGCAAAG
  CTATGCTTTG TGGCAAAATG GAATCCCAAG GAAGTGGGCG TGGGGGGGTA CCCCGGTGGC
  AGGAAATTCC CATGATCTTT CTGAGACCTC TAGAGAGAGA GAGGTTAAGT GTGGCTTTAG
  CTGGTACCTC CCTCTGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss47616015	NES10289343	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs32019871					SNP	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616015	NES10289343	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24598064 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	597 bp upstream
Atg9b	autophagy related 9B	923 bp upstream
Cpgi15597	CpG island 15597	1170 bp proximal
Rr112283	regulatory region 112283	within coordinates
Rr124925	regulatory region 124925	736 bp proximal
Rr398998	regulatory region 398998	342 bp upstream
Rr398999	regulatory region 398999	1103 bp upstream
Tssr45411	transcription start site region 45411	574 bp upstream
Tssr45412	transcription start site region 45412	1322 bp upstream
Tssr50315	transcription start site region 50315	1105 bp upstream
Tssr50316	transcription start site region 50316	1059 bp upstream
Tssr50317	transcription start site region 50317	1035 bp upstream
Tssr50318	transcription start site region 50318	572 bp upstream
Tssr50319	transcription start site region 50319	368 bp upstream