rs32019896 SNP Detail

Summary

• ID
  rs32019896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24548189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAGGCAGAG TGCTGCCCAG CCTGCTGGGT AGCTCCAGGC CAGCTGAGGA CAAGGGGTGT
  CAGCGCCACT GGGACCCTCC TGAGCTCCTC CTCAGACTGT GACTCAGAGC TCCCTGCATG
  TCACAGAGTC ACGTCTCAGT CCCTCACCCA TGGGGGCCAG CGACCTCTGC TCTCTTGCCT
  GCACACAGGT GGGAGGCAGG TTTTAGAGGG GAATGTCAAT CTCTGGCCAG TGTGTTCTCT
  AGGACAGGTG GTCGGCACCC TCGGGGAGGC TAAGTAAGTT CCTGGGAGCT CTGGGATCTC
  R
  GGGCACGGAA GCCACCCCAG CTCACCCACC TCCACCACCT AGCAAGCAAG CCCTCCTGCT
  GTTCCAGTCC CCCTCCCCAG AGCCCAAGGC CACTGTCAAC TCTGCTTCCA CCGACAGCTC
  TGCACAAATA TTTACATAGT TCCTCTGGGG CTTCGGAGAC ACCACACACA GGAGCAGGAG
  GCACCCTCCT GACACTGTCC AGGCCTAGGG CCTCTGAGGA AACAGCACCT CTCTACCCTC
  ATGGACAGGA AGCCCTCAGC AGCCCACCAC AGGGAAGCTA GGAGAAAAGT CCTTAGCAGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45762445	mCV25227498	ABI	CRAMUS_MOUSE	f	SNP	A	A	G				G		G
ss47616447	NES10290916	PERLEGEN	MM_PANEL2	f	SNP			G	G	G	G		G	G	G	A	G	G	A	G	G
ss148091780	ENSMUSSNP2582525	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32019896					SNP	A	A	G	G	G	G	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616447	NES10290916	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24548189 () rs orientation: forward

Symbol	Name	Function Class
Gm71601	predicted gene, 71601	833 bp downstream
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50307	transcription start site region 50307	1338 bp downstream
Tssr50308	transcription start site region 50308	1359 bp downstream
Tssr50309	transcription start site region 50309	1381 bp downstream