rs32020058 SNP Detail

Summary

• ID
  rs32020058
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29892829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC CCTACTCCTC CCAGGGATCA
  S
  TGCTTGGATC ACCAACGATA TAGGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss46094575	mCV24567912	ABI	CRAMUS_MOUSE	f	SNP	C	C
ss148668618	ENSMUSSNP326613	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322132185	CHEV_7_30978423	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs32020058					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29892829 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	375 bp distal
Cpgi18782	CpG island 18782	383 bp proximal
Cpgi18783	CpG island 18783	1075 bp proximal
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	200 bp upstream
Rr400233	regulatory region 400233	1631 bp upstream
Tssr65662	transcription start site region 65662	525 bp upstream
Tssr71696	transcription start site region 71696	474 bp upstream
Tssr71697	transcription start site region 71697	453 bp upstream
Tssr71698	transcription start site region 71698	422 bp upstream
Tssr71699	transcription start site region 71699	296 bp upstream
Tssr71700	transcription start site region 71700	261 bp upstream
Tssr71701	transcription start site region 71701	37 bp upstream
Tssr71702	transcription start site region 71702	390 bp downstream
Tssr71703	transcription start site region 71703	596 bp downstream
Tssr71704	transcription start site region 71704	690 bp downstream
Tssr71705	transcription start site region 71705	748 bp downstream
Tssr71706	transcription start site region 71706	1616 bp downstream
Tssr71707	transcription start site region 71707	1628 bp downstream
Tssr71708	transcription start site region 71708	1642 bp downstream
Tssr71709	transcription start site region 71709	1817 bp downstream