rs32020209 SNP Detail

Summary

• ID
  rs32020209
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126394173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGGGTCC CTTCCCCTTT
  GCTCTCACTA ATGCCTGACT TATTACCGAG AGTGTGTGGG GGGGGTCTTG TTTCCCCATG
  AACTACACAC ACATACATAC ACACAAATGC CGTACACACA CATGTGAACA CACACACAGG
  AAAAGATAAA GGCTTCCCCC CAGCAACACA CCATTAAAAT CATCAAAGGC CCTGGGAGGC
  K
  TTGACAGCAC TTCCCTCCAG TGTGTGATGT TCTGTCATTT GTGGTTGACA GGAAGCCTGT
  GAAACAAACA TACTACTGTT TCATGTAAAT ATTTGAGCAC TCACACAAGC ACAGAAAATA
  ACACCATGGT GACTGGCAAG ATGGTTCAGA GAGAGAGGCA AGCAGTGGGT ATGATTCCTT
  TTCTTTAAGG TGATATGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47616202	NES11170409	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32020209					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616202	NES11170409	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126394173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21286	CpG island 21286	1919 bp proximal
Gm30871	predicted gene, 30871	311 bp upstream
Gm63868	predicted gene, 63868	1197 bp downstream
Rr175263	regulatory region 175263	1828 bp proximal
Rr188607	regulatory region 188607	within coordinates