rs32020212 SNP Detail

Summary

• ID
  rs32020212
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126394392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGTGAT GTTCTGTCAT
  TTGTGGTTGA CAGGAAGCCT GTGAAACAAA CATACTACTG TTTCATGTAA ATATTTGAGC
  ACTCACACAA GCACAGAAAA TAACACCATG GTGACTGGCA AGATGGTTCA GAGAGAGAGG
  CAAGCAGTGG GTATGATTCC TTTTCTTTAA GGTGATATGG GAAGTGGAGA CAGGAGAGCC
  K
  CCTGGAAGCC TACAGGTCAG CTAGTCAGGA ATATGTGGTA TTGTATAATC AACAAGAGAA
  AAGCTCACCT CAACAGGGTA GAAGAAGACC GCAAAAGATA TCCTCTGACC TCCAGACATG
  TGTCGTGAAC AGTATGTCAG TACACAGTGA CATACAAGTC ATCACACACA CACACACACA
  CACACATATA CACACATACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47616205	NES11170410	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32020212					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616205	NES11170410	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126394392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21286	CpG island 21286	1700 bp proximal
Gm30871	predicted gene, 30871	530 bp upstream
Gm63868	predicted gene, 63868	978 bp downstream
Rr175263	regulatory region 175263	1609 bp proximal
Rr186277	regulatory region 186277	1808 bp proximal
Rr188607	regulatory region 188607	within coordinates