rs32020982 SNP Detail

Summary

• ID
  rs32020982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24533037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCAGTGA AGTCCTAAAG
  AGTCTCGTTC ACGTTCAAGT GGGAATCCCT TGAGCCTGTC TGCATAGGTG GTGCTGTTTA
  GAGACCATCT TAGGGAAAGG AGCTGGTAAG AAAGATGGAT CTTAAGGACC CCCCCCCCAG
  AATAGACACA GAGACTTCCA AGAAAAGAGA TGGGGTGTGG ATGAGTACCA GGCCCTGGTC
  R
  GAGGAGGATC CTAGGTCTAC CCTGCCTTCA GACTGAGGGC TTCTTAATTA AAACACAGGG
  CTAATACACG AGGTTAGTGA CCTTTCAAGC CATCAAAAAA GAGCAGGCTA GGACCCCACA
  GACAAGGGGC AACAGGGGGG TGGCTGTTAC TCCATAGGAC CCATCTCTGT GCCTGAGCAC
  AGGCCTGAGG AGCTATACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47616663	NES10291616	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	A		G	G	G
ss148091654	ENSMUSSNP1856141	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32020982					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616663	NES10291616	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24533037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15592	CpG island 15592	1523 bp proximal
Gm15589	predicted gene 15589	within coordinates
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Rr112277	regulatory region 112277	837 bp distal
Rr124919	regulatory region 124919	763 bp proximal
Tssr50305	transcription start site region 50305	1232 bp downstream
Tssr50306	transcription start site region 50306	1517 bp downstream