rs32021050 SNP Detail

Summary

• ID
  rs32021050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126394965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAGACC TGTAAATATA
  ACCCATCTCT GCAGGTTGGG CCAAGCTAGG TTTGGGGGCT GATGCCTGTG ATCCTAGCAC
  TGGAGGCTGT GATGGGTGGA TCACAAGATC AAACCTGGGT GGCAAAGGAG ACCCTGCTGT
  CTCAAAGACA AACAAACATC AGGCTGATTT TCCTACAGAA TAAACTGTTT ACTGCTGTAG
  Y
  GAATTCTACA GAATAAACCT CCAGAGAGGC CCTGAATTTG CCTCTCTGCT GTTGAGTGTT
  TGATGGTCTT TGTTCCCTGA GCCATGTTTT TGACATGGAT GCTGCTAGTT TTCCACACTT
  AACTAAAGAC AGGAAGATCT AACATCTATT GCAGCTTGAA CACTTGTTGC TATGCAACCT
  AACTGATGAG GTTACCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47616214	NES11170368	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32021050					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616214	NES11170368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126394965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21286	CpG island 21286	1127 bp proximal
Gm30871	predicted gene, 30871	1103 bp upstream
Gm63868	predicted gene, 63868	405 bp downstream
Map10	microtubule-associated protein 10	1592 bp upstream
Rr175263	regulatory region 175263	1036 bp proximal
Rr186277	regulatory region 186277	1235 bp proximal
Rr188607	regulatory region 188607	540 bp distal
Tssr80077	transcription start site region 80077	1602 bp upstream
Tssr83475	transcription start site region 83475	1511 bp downstream