rs32021053 SNP Detail

Summary

• ID
  rs32021053
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126395060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATCACA AGATCAAACC
  TGGGTGGCAA AGGAGACCCT GCTGTCTCAA AGACAAACAA ACATCAGGCT GATTTTCCTA
  CAGAATAAAC TGTTTACTGC TGTAGTGAAT TCTACAGAAT AAACCTCCAG AGAGGCCCTG
  AATTTGCCTC TCTGCTGTTG AGTGTTTGAT GGTCTTTGTT CCCTGAGCCA TGTTTTTGAC
  M
  TGGATGCTGC TAGTTTTCCA CACTTAACTA AAGACAGGAA GATCTAACAT CTATTGCAGC
  TTGAACACTT GTTGCTATGC AACCTAACTG ATGAGGTTAC CAAGAGGACT AAGACCAACA
  AGAAGCTGGT AAGAACCCAG CATATTTTGG TGCCTGTGGA GGGTGGAGCA TCACAGCTGA
  TAGTTGGTCA CCTGCTTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47616217	NES11170370	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32021053					SNP	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616217	NES11170370	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126395060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21286	CpG island 21286	1032 bp proximal
Gm30871	predicted gene, 30871	1198 bp upstream
Gm63868	predicted gene, 63868	310 bp downstream
Map10	microtubule-associated protein 10	1497 bp upstream
Rr672993	regulatory region 672993	1633 bp distal
Rr672994	regulatory region 672994	677 bp distal
Rr672995	regulatory region 672995	958 bp proximal
Rr672996	regulatory region 672996	1405 bp proximal
Tssr80077	transcription start site region 80077	1507 bp upstream
Tssr83475	transcription start site region 83475	1416 bp downstream