rs32021720 SNP Detail

Summary

• ID
  rs32021720
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24532545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCCTG CTGCTATTCT
  TTCTCAGGCT TCTCTCCACC TTAACCCAGA TTAGCCTCCC ATGCTCTTAC AAAGGGACAC
  AAGGGACAGA GTCCAACCCA GGCACCTCAA AAATACAGAG GGATATACCC AGGATGGCTC
  AGAGATGCAC TCTTGGCCTA CACGGAACCC CATTTTCAGA TGGGGGACAC AAGCCCCTCA
  K
  CATCCAGGCA AAGGCAGCCC ACCATAGGGA CCAGGGGCAA CAGCACAGCC AGCAATCTTG
  CTCTCAAACC TGCCTGGGGA GAACTAGCTT TCCCGGGTGT CAGAAGGCCC CCTGCCCACC
  CACCCTGAGA ATTCTCTGGC AGACCTCTGA GTCAGCTAGA ATCCCTTCCT CAGCCCCTCT
  AGCCTTGACC ATTCCATGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47616672	NES10291611	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32021720					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616672	NES10291611	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24532545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15591	CpG island 15591	1582 bp distal
Gm15589	predicted gene 15589	within coordinates
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Rr112277	regulatory region 112277	345 bp distal
Rr124919	regulatory region 124919	1255 bp proximal
Tssr50305	transcription start site region 50305	1724 bp downstream