rs32022026 SNP Detail

Summary

• ID
  rs32022026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126395708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTGACT TAGATCAAAT
  AAATAGGAAG GGAGACTCCT GATCTGCGTC TTATATGAGA GACCAGGGTT GGGAATCTTC
  GAGACACCCT GGAAGTTGTG GAGCTTCTGA ACTTGGATCT GAGATGTAAA ATCGTAAAAT
  GGGCTGGTGC TAAATTCCTC TGTGCGTAGC TTGTGCACTA CAGATCTCCA GTGGCAGACA
  Y
  TACTTTCACT CACCGCTCCT CCCAGACATA TGTACCAATG CCATTTGCCT ACTAACTGAA
  CCAATCACTT CTTCCGCTCT CATGGCGGTG GTACTGGAGA TTGTATGCAG TGAACAAGCA
  CTCTTCCACT GAGCTGCACC TCCAGCCCTG ACCCATCATT TTCAATACCT TAGGATAGTA
  CATGATCCCT CTCCCCCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47616220	NES11170311	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	T	C	C		C
ss322860933	CHEV_8_128192869	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32022026					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616220	NES11170311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126395708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21286	CpG island 21286	384 bp proximal
Gm30871	predicted gene, 30871	1846 bp upstream
Gm63868	predicted gene, 63868	within coordinates
Map10	microtubule-associated protein 10	849 bp upstream
Rr175263	regulatory region 175263	293 bp proximal
Rr186277	regulatory region 186277	492 bp proximal
Rr188607	regulatory region 188607	1283 bp distal
Tssr80077	transcription start site region 80077	859 bp upstream
Tssr83475	transcription start site region 83475	768 bp downstream