rs32023876 SNP Detail

Summary

• ID
  rs32023876
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51623057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGAAGA GACCAGAAAA
  GGACATTAGA GACCCATGAA GCTGGAGATT CAGACAGCTG TGGATCACCA GCTGTGGTCC
  AGGGAGCTCT ACTCTTCTCT GTCCTCAGGA AGAATATGAG TGCTCTTGAC TGCTGAGCCA
  TCTCTCCAGC CACAGCTAGG TGTATTTCTG AAAGTTGGTG GTACTGACAT TTCAATGATT
  K
  TCAGCCTCGG AGATATGCAA CCAAAGGCTT TGGTCACACT CTAAAAGATA CGCATTCCTC
  TAAAGATGTT TCCTTTGTCT AGAGTTGTTT ATATACACAG GGCAAGATGA ATGAAAGCAA
  ACAAGATATG AAGCATATCT AGAGCCCACA CACCCATAAT CAAATTAGAA CATGCGGCTT
  ATCTGTCTGA CAGTGAGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45097410	mCV23216010	ABI	CRAMUS_MOUSE	f	SNP	T	G				G
ss47349860	NES11071130	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G	G	G	G	T	G	G	T
ss149111617	ENSMUSSNP654294	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32023876					SNP	T	G	G	G	G	G	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47349860	NES11071130	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51623057 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Gm70189	predicted gene, 70189	1490 bp upstream
Rr366895	regulatory region 366895	1033 bp upstream
Tssr6632	transcription start site region 6632	1454 bp upstream
Tssr6633	transcription start site region 6633	1515 bp upstream
Tssr11575	transcription start site region 11575	1073 bp downstream
Tssr11576	transcription start site region 11576	1364 bp downstream