rs32024003 SNP Detail

Summary

• ID
  rs32024003
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19429414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATCCAGCTA ACTTCAGAGC AAGGGAGAAA GGCTGAGGTT CCAAAAGCCA CGTAGAAACC
  GTAGAAACCG CCAACCAAAG GCCCAGAGCA AAAGAAACCG CGGGAGGGTG AGATAACAGA
  GGATCAGGAA AACAGGAAGC CAGAAAAGGA AGCCTAGAAG GGAAAAAGAG GAGAGACAAG
  GCAAGGAGAG GGTGTCAGAT AAGACTAGAG CGGAGGAGGA GAGATAAGAC AACCAGAAAA
  GTAAACACCG CCTGGCGACC CTGGTCTCTT ACATGTTGAT TGATTCAAGG CATAGCTGTG
  S
  AGTGGGTGCT TGGGAAGTTG GGAAAAGTAG CCCAACTGAC CCACATGAAG TGGTACATGC
  CTTTCTCAGT TCCTGTAGAG ATTGATTTGA AAACAAAGAT TCAAATATTC AAGACCAAAC
  TAGGCTAGAG GGAGTGCAAG GAAAATCAGT TGAGATCCTA TTTCAGACTA AAAAGAAGGG
  TGGATATAGC TAAATAGAAG AGCCTGTACT GGGTGCTGGA GAGATGGCTC AGCAGTTAAG
  AGCACTGACT ACTCTTCTAT AAGTCCTGAG TTCAATTCCC AGCAACCACA TGGTGGCTCA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
ss46095440	mCV25053630	ABI	CRAMUS_MOUSE	f	SNP	G						C
ss48163962	NES11834482	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	G	G		G	C	C	G
ss148481697	ENSMUSSNP2247524	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
rs32024003					SNP	G	C	C	C	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163962	NES11834482	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19429414 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	620 bp downstream
Cpgi18507	CpG island 18507	1032 bp proximal
Gm71725	predicted gene, 71725	1629 bp upstream
Rr155346	regulatory region 155346	587 bp proximal
Rr167193	regulatory region 167193	1813 bp distal
Rr167194	regulatory region 167194	986 bp proximal
Tssr2112	transcription start site region 2112	962 bp upstream
Tssr2113	transcription start site region 2113	987 bp upstream
Tssr2114	transcription start site region 2114	1102 bp upstream
Tssr2115	transcription start site region 2115	1138 bp upstream
Tssr2116	transcription start site region 2116	1213 bp upstream
Tssr2117	transcription start site region 2117	1235 bp upstream
Tssr2118	transcription start site region 2118	1342 bp upstream
Tssr2119	transcription start site region 2119	1351 bp downstream
Tssr2120	transcription start site region 2120	1414 bp upstream
Tssr2121	transcription start site region 2121	1446 bp upstream
Tssr64880	transcription start site region 64880	779 bp upstream
Tssr64881	transcription start site region 64881	831 bp upstream
Tssr64882	transcription start site region 64882	875 bp upstream
Tssr64883	transcription start site region 64883	913 bp upstream
Tssr64884	transcription start site region 64884	940 bp upstream
Tssr64885	transcription start site region 64885	1019 bp upstream
Tssr64886	transcription start site region 64886	1040 bp upstream
Tssr64887	transcription start site region 64887	1072 bp upstream
Tssr64888	transcription start site region 64888	1291 bp upstream
Tssr64889	transcription start site region 64889	1385 bp upstream
Tssr64890	transcription start site region 64890	1431 bp upstream
Tssr64891	transcription start site region 64891	1454 bp upstream
Tssr64892	transcription start site region 64892	1487 bp upstream
Tssr64893	transcription start site region 64893	1522 bp upstream
Tssr64894	transcription start site region 64894	1976 bp upstream
Tssr70973	transcription start site region 70973	803 bp downstream
Tssr70974	transcription start site region 70974	849 bp downstream
Tssr70975	transcription start site region 70975	877 bp downstream
Tssr70976	transcription start site region 70976	912 bp downstream
Tssr70977	transcription start site region 70977	960 bp downstream
Tssr70978	transcription start site region 70978	975 bp downstream
Tssr70979	transcription start site region 70979	999 bp downstream
Tssr70980	transcription start site region 70980	1009 bp downstream
Tssr70981	transcription start site region 70981	1030 bp downstream
Tssr70982	transcription start site region 70982	1044 bp downstream
Tssr70983	transcription start site region 70983	1077 bp downstream
Tssr70984	transcription start site region 70984	1094 bp downstream
Tssr70985	transcription start site region 70985	1159 bp downstream
Tssr70986	transcription start site region 70986	1192 bp downstream
Tssr70987	transcription start site region 70987	1222 bp downstream
Tssr70988	transcription start site region 70988	1266 bp downstream
Tssr70989	transcription start site region 70989	1305 bp downstream
Tssr70990	transcription start site region 70990	1317 bp downstream
Tssr70991	transcription start site region 70991	1362 bp downstream
Tssr70992	transcription start site region 70992	1370 bp downstream
Tssr70993	transcription start site region 70993	1379 bp downstream
Tssr70994	transcription start site region 70994	1420 bp downstream
Tssr70995	transcription start site region 70995	1425 bp downstream
Tssr70996	transcription start site region 70996	1458 bp downstream
Tssr70997	transcription start site region 70997	1492 bp downstream
Tssr70998	transcription start site region 70998	1554 bp downstream
Tssr70999	transcription start site region 70999	1572 bp downstream