rs32025946 SNP Detail

Summary

• ID
  rs32025946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148887157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTA CTTTGTCACC TCTCGGATGA
  Y
  AGTGACTCAG TTTCTCTCCG TGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45598633	mCV24952113	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss148019780	ENSMUSSNP5499873	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss321423028	CHEV_4_148176809	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32025946					SNP	T	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148887157 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	1729 bp upstream
Cpgi15311	CpG island 15311	1143 bp proximal
Rr100549	regulatory region 100549	1043 bp proximal
Rr407230	regulatory region 407230	1026 bp proximal
Tssr1379	transcription start site region 1379	1630 bp upstream
Tssr40301	transcription start site region 40301	1650 bp upstream
Tssr40302	transcription start site region 40302	1720 bp upstream
Tssr40303	transcription start site region 40303	1750 bp upstream