rs32026621 SNP Detail

Summary

• ID
  rs32026621
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44396064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATATAT ATATATATAT
  ATATATATAT ATATATATAC ATATGTAGAA ATATATGTAC GTACACATTC AGTATCCTAG
  ACAGAAAAAA AAAATCCCTT CTTGCTCCTT CTGCTCCATG AAAAGTTTTT GTCCTCCTTA
  AGCTCATCTT AAAGACTATT CATGCTGTTA ACAAATTTAT CTCTTTTATA AACTTACAAA
  S
  TACAGGAAAC CCACTCCAAT CTACTTCTTA TGGACTAAAT AGTCTCCATC CAGGTAAGTA
  CACCTGCCAA GCAATAGCCT ACGTTCTCAC TGGCTACCTA TTCCAGAGGG TGAGATTGCT
  CTCCTGTTCC TGGGATTGGG ACTCCTCTTA CCCCAAAGAC CTAATTTTTT TTCTCCCAAA
  CGTACTTAAC TTTATTCTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss46095570	mCV27580295	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss149120936	ENSMUSSNP5091345	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs32026621					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44396064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18992	CpG island 18992	1130 bp distal
Cpgi18993	CpG island 18993	1744 bp proximal
Rr400296	regulatory region 400296	1655 bp upstream
Rr646209	regulatory region 646209	854 bp distal
Rr646210	regulatory region 646210	1133 bp distal
Rr646211	regulatory region 646211	1062 bp proximal
Rr646212	regulatory region 646212	1399 bp proximal
Rr646213	regulatory region 646213	1784 bp proximal
Rr646214	regulatory region 646214	1967 bp proximal
Tssr66420	transcription start site region 66420	1863 bp upstream
Tssr66421	transcription start site region 66421	1962 bp upstream
Tssr66422	transcription start site region 66422	2000 bp upstream
Vrk3	vaccinia related kinase 3	1985 bp upstream
Zfp473	zinc finger protein 473	within coordinates