rs32027604 SNP Detail

Summary

• ID
  rs32027604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94541572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTCCTT TGGGTTGAGA
  GGAGGAATAT TGCTATCCGA ATGTTATCAG ATCCTTTGTC ATCAGCGTTT TCAGAAGGCA
  AGGAGCTGCT TCAGTCGGCT TGTGTCCTCG TCCAGGTTGC GGTGCTGCTT ATGAGGAGGA
  ATCAGAATAT GCCTGTAGCA GCTAGTGAAG CCGTTAGGGA CTGGCAGGCA GAGACACTGC
  Y
  TAGAACAGGG CGTTATTACC CTCATCAGCC CAGGGCCGTT ACACACTCAA ACCTTTGGAA
  TTTTTCTGCA CAATGCAATA AGGGGGAGTT TGCATCAATT TTCAGAAGCC TAATTCTCAA
  GTGTTTAAAA TCTTTTGGGG TGTGTGTGTG TGTGTGTGTG TGTAAAGGAC AACTCCATGG
  AGTCTGTTCT TCCTTCTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47617274	NES11487357	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32027604					SNP	T	C	T	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47617274	NES11487357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94541572 () rs orientation: forward

Symbol	Name	Function Class
4930488L21Rik	RIKEN cDNA 4930488L21 gene	1389 bp upstream
Cpgi20832	CpG island 20832	1143 bp distal
Gnao1	guanine nucleotide binding protein, alpha O	within coordinates
Rr667835	regulatory region 667835	1233 bp distal
Rr667836	regulatory region 667836	913 bp distal
Rr667837	regulatory region 667837	within coordinates
Tssr82470	transcription start site region 82470	1370 bp upstream
Tssr82471	transcription start site region 82471	1356 bp upstream