rs32027607 SNP Detail

Summary

• ID
  rs32027607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:94541977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGTTCG GAGATCAAAC
  TCAAATTGCC AGCCTTGTGA CAAAGTGCCT TTATCCTCTG AGCTATCTTG CTGGCACCGC
  CTTTACCTTC ATATTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCGTGTGC ATTTGTGGAT TAGTGTCTGG AAGGTCTCTG TCATGCAATA
  Y
  ACAACATTTA AGTTCCAAGA CACGAACGGT GGTGATTGAA GTAGTGCAAG TGCAGCTTCA
  CACGTCCTAT GAGTAGGGGT GGCTCCTTTC CTCTGCGTGG CACTTTGCTT GTGTTTGGGG
  CCTGTGACCT CACGTGGGAT ATACCCTCAT CATTGTTTCA GTAATTAGGG ATGCTTTTAC
  ACAGACTAAT AAAAATTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47617277	NES11487207	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32027607					SNP	T	T	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47617277	NES11487207	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94541977 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930488L21Rik	RIKEN cDNA 4930488L21 gene			1794 bp upstream
Cpgi20832	CpG island 20832			1548 bp distal
Gnao1	guanine nucleotide binding protein, alpha O			Intron
				Noncoding-Transcript-Variant
Rr667835	regulatory region 667835			1638 bp distal
Rr667836	regulatory region 667836			1318 bp distal
Rr667837	regulatory region 667837			366 bp distal
Tssr82470	transcription start site region 82470			1775 bp upstream
Tssr82471	transcription start site region 82471			1761 bp upstream