rs32027621 SNP Detail

Summary

• ID
  rs32027621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCGTTT CGGCGAAGGG
  CTGCTTGAGG CAGAGCTGGC TTCACTGTGC CCTGCTGCGA TCGCCCCCTA CTATCTGCGC
  GCCCCCAGTG TGGCGTTACC CACAGCCCAG GTGCCAGGCC TAGGGAGAGG GCCAATCCAA
  CTACTAACAA GACTGGGGGC CAGGAGGGGG GTCTAACCCC GGGCCGGGGG TGCGGGAATG
  Y
  CTGTTGATTT TTAACTTAGA GGAGAATGTC ACCCCTCAGT GGGGCCATTG GGTGTCCCTT
  GAGTGCGGTA TTCTGAGCCC CTCCCCCCCC CCCCCCCCGT TACTGATCTT CTGAGGGGGT
  GAAGGGTGGG GCAAGTGAGC CGGGAATCTG GGGGAAAGGA CAAGTGAGTC CCGACGGGCT
  GTAATGTTCC TAGGGTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46095970	mCV25394904	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss148682321	ENSMUSSNP1596735	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs32027621					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	972 bp distal
Cpgi18809	CpG island 18809	89 bp distal
Cpgi18810	CpG island 18810	603 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1818 bp downstream
Mir9769	microRNA 9769	719 bp downstream
Proser3	proline and serine rich 3	1324 bp upstream
Rr400242	regulatory region 400242	1131 bp downstream
Tssr65779	transcription start site region 65779	1059 bp downstream
Tssr65780	transcription start site region 65780	351 bp downstream
Tssr65781	transcription start site region 65781	314 bp downstream
Tssr65782	transcription start site region 65782	1149 bp upstream
Tssr65783	transcription start site region 65783	1224 bp upstream
Tssr65784	transcription start site region 65784	1248 bp upstream
Tssr65785	transcription start site region 65785	1300 bp upstream
Tssr65786	transcription start site region 65786	1318 bp upstream
Tssr65787	transcription start site region 65787	1412 bp upstream
Tssr71787	transcription start site region 71787	1307 bp upstream
Tssr71788	transcription start site region 71788	1248 bp upstream
Tssr71789	transcription start site region 71789	1042 bp downstream
Tssr71790	transcription start site region 71790	1154 bp downstream