rs32028879 SNP Detail

Summary

• ID
  rs32028879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:14912074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCAGTAT AGGTTTGCAG
  TGGGCCCTAT GTTGTTGTGT ACTCCCAGCT TTAAGAGAAA GCTTTAGAAG GGCCCTTTCC
  TCGAAGCTAA ACTCACAAAG CCTAAAACCT TGCAGCTGTT CACTAAAGAT TACCAGCAAG
  ATAGGGGCTA TAAAATTCAA GCCTCAGATG CAAAGCTCTG CACATTTTCT CAGGTCCAGA
  Y
  GCCTCCAAAT ATTCTACATC TTTCTCACCA ATCAAAGAGC CTTCACGAGA GCTTATTATG
  TGTCTTGCTT CTTTGGGGTC TAAAAGTTGG TTTACAAATG GCTGTTCTTG TTTCAAAAGA
  ACGGCCAGCT TACTGAGGAC CATCTTTGAA GTGAGTGGAA CCAGGCCACC CTTTTGTTTT
  TACCAGGGAC CAAAAGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47117020	NES11135931	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32028879					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47117020	NES11135931	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:14912074 () rs orientation: forward

Symbol	Name	Function Class
Rr408018	regulatory region 408018	within coordinates
Rr408019	regulatory region 408019	310 bp proximal
Smt3h2-ps4	SMT3 suppressor of mif two 3 homolog 2, pseudogene 4 (S. cerevisiae)	1694 bp upstream