rs32030656 SNP Detail

Summary

• ID
  rs32030656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:179345585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA GTCTCGTGTT TTCTGACTGC
  R
  CGCCTGCGTC CTGCGCTTGC GTACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45098422	mCV23635953	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss146368909	ENSMUSSNP3405697	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32030656					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179345585 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1095	CpG island 1095	within coordinates
Rr396646	regulatory region 396646	within coordinates
Rr424271	regulatory region 424271	within coordinates
Rr424272	regulatory region 424272	19 bp proximal
Smyd3	SET and MYND domain containing 3	mRNA-UTR
Tssr15501	transcription start site region 15501	31 bp upstream
Tssr15502	transcription start site region 15502	within coordinates
Tssr15503	transcription start site region 15503	8 bp downstream