rs32035323 SNP Detail

Summary

• ID
  rs32035323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74544499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG AATATCGCAG TCAAGGTTTT
  R
  ATGGATATGT GGCAACAAAG TCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45098926	mCV24840602	ABI	CRAMUS_MOUSE	f	SNP	G	G		A
ss49420170	NES12772846	PERLEGEN	MM_PANEL2	f	SNP		G	G		G	A	A		G	A		G
ss144687824	ENSMUSSNP6969527	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss319794730	CHEV_1_74551914	CHEVERUD	SCREENING_POP	f	SNP								A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32035323					SNP	G	G	G	A	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49420170	NES12772846	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74544499 () rs orientation: forward

Symbol	Name	Function Class
Cnot9	CCR4-NOT transcription complex, subunit 9	718 bp upstream
Cpgi385	CpG island 385	within coordinates
Rr396106	regulatory region 396106	435 bp upstream
Rr413210	regulatory region 413210	within coordinates
Rr413211	regulatory region 413211	453 bp proximal
Rr413212	regulatory region 413212	729 bp proximal
Rr413213	regulatory region 413213	1304 bp proximal
Tssr7425	transcription start site region 7425	683 bp upstream
Tssr7426	transcription start site region 7426	704 bp upstream
Tssr7427	transcription start site region 7427	771 bp upstream
Tssr7428	transcription start site region 7428	969 bp upstream
Tssr7429	transcription start site region 7429	1038 bp upstream
Tssr7430	transcription start site region 7430	1362 bp upstream
Tssr12315	transcription start site region 12315	340 bp downstream
Tssr12316	transcription start site region 12316	447 bp downstream
Usp37	ubiquitin specific peptidase 37	within coordinates