rs32037339 SNP Detail

Summary

• ID
  rs32037339
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:104256590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAACTGAAG ATCTGCGTCT CCTTCCCTGA TCTTTCTTGG
  ACGGTTTGAT TGGTAGTGCA TCAAATGGTC ACGTGGGCTG TGGTCCTTCC TGCTCTAAGG
  W
  CTGTGCACAA GATGTTCACA TTTATTCCCC CCACCCCCCA GCTACCCTGC CACACACAAT
  TAACCTCTGT TTAGCCTTCA GATGGGGGAG GAGGGGAGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46633489	NES10407407	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	T	A	T	T	A	A		A	T	T	T		T
ss148951031	ENSMUSSNP1004061	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						T
ss321633685	CHEV_5_104537743	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32037339					SNP	T	A	T	A	T	A	T	T	A	A	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46633489	NES10407407	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:104256590 () rs orientation: forward

Symbol	Name	Function Class
Gm26703	predicted gene, 26703	493 bp upstream
Rr123937	regulatory region 123937	10 bp proximal
Rr378391	regulatory region 378391	within coordinates
Sparcl1	SPARC-like 1	within coordinates
Tssr1563	transcription start site region 1563	239 bp downstream