rs32037340 SNP Detail

Summary

• ID
  rs32037340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:104256640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTAGTGCA TCAAATGGTC ACGTGGGCTG TGGTCCTTCC
  TGCTCTAAGG ACTGTGCACA AGATGTTCAC ATTTATTCCC CCCACCCCCC AGCTACCCTG
  Y
  CACACACAAT TAACCTCTGT TTAGCCTTCA GATGGGGGAG GAGGGGAGAA GGGGAGGGAG
  GACAGGGAGA AGCCACTTTT AACCTTGAAT AGAGGTTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46633490	NES10407408	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	C		C	C		C	C
ss148951036	ENSMUSSNP5856871	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss321633686	CHEV_5_104537793	CHEVERUD	SCREENING_POP	f	SNP												T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs32037340					SNP	T	T	C	T	C	T	C	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46633490	NES10407408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:104256640 () rs orientation: forward

Symbol	Name	Function Class
Gm26703	predicted gene, 26703	443 bp upstream
Rr123937	regulatory region 123937	within coordinates
Rr378391	regulatory region 378391	within coordinates
Sparcl1	SPARC-like 1	within coordinates
Tssr1563	transcription start site region 1563	289 bp downstream