rs32038224 SNP Detail

Summary

• ID
  rs32038224
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:104257312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGCTTTA GCGAGCACCG
  GAAGAAGCAA GCTGGTTAAG TAATAGAAAT GCGGACCAGA ACTTGTGCCT GGGGCTACTC
  GCAGAGTCAG CAGGATTTCA AAGGTAAATG GTAATCTGCA GAATCGAGGA GCTCAACCTT
  AGTCAGCTAC AGGGTGGATC CAGTCCACAC AGGCTCCGGT AGAAGAGACA CACAGAAGAC
  W
  CTCCACAGAA CTCAGGAAGT GTGAGATAAT AAAATATAGA GAATGATTAA AGTAGAAAGA
  TGTTTAAAAT CTCCATGAAG TGAGTTAGAA CTCCAACAGA TACATTGCTT TGCTCATTTG
  TACATTTAGT TCAGCCAAAA CCCACTAGAA AAATGAAGGT GGCTTTGTCC TCAAGGTCAC
  CTTATGCTTG CATCTGCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46633494	NES10407339	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32038224					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46633494	NES10407339	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:104257312 () rs orientation: forward

Symbol	Name	Function Class
Gm26703	predicted gene, 26703	within coordinates
Rr123937	regulatory region 123937	within coordinates
Rr378391	regulatory region 378391	within coordinates
Sparcl1	SPARC-like 1	within coordinates
Tssr1563	transcription start site region 1563	961 bp downstream