rs32038226 SNP Detail

Summary

• ID
  rs32038226
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:104257407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAAGGT AAATGGTAAT
  CTGCAGAATC GAGGAGCTCA ACCTTAGTCA GCTACAGGGT GGATCCAGTC CACACAGGCT
  CCGGTAGAAG AGACACACAG AAGACTCTCC ACAGAACTCA GGAAGTGTGA GATAATAAAA
  TATAGAGAAT GATTAAAGTA GAAAGATGTT TAAAATCTCC ATGAAGTGAG TTAGAACTCC
  W
  ACAGATACAT TGCTTTGCTC ATTTGTACAT TTAGTTCAGC CAAAACCCAC TAGAAAAATG
  AAGGTGGCTT TGTCCTCAAG GTCACCTTAT GCTTGCATCT GCAGTTTCCA TTCCTGGGAT
  GGTTTGATTA ATGGCCGTTT CCCTCCACAC AGAGGAGGAG CCCAGCTCTG CTCCAGTGCT
  GTCCCTTGCT GCCTCCCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46633496	NES10407341	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32038226					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46633496	NES10407341	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:104257407 () rs orientation: forward

Symbol	Name	Function Class
Gm26703	predicted gene, 26703	within coordinates
Rr378391	regulatory region 378391	within coordinates
Rr616034	regulatory region 616034	314 bp distal
Rr616035	regulatory region 616035	576 bp proximal
Rr616036	regulatory region 616036	1077 bp proximal
Sparcl1	SPARC-like 1	Intron
Tssr1563	transcription start site region 1563	1056 bp downstream