rs32039117 SNP Detail

Summary

• ID
  rs32039117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163899213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAGAGACT GTAAGCCAAC CCAGTTTGTA TATCCAAAGG
  GTAGAAATGG CCTTTTAGTT GGTTTGAGTG GAAATGAAGG GCAGGGGTCC AACTGCATTG
  Y
  TATATATCAT TGCAGACCCT GGGCATATAA GCAATAAGAT TTTTGTGTAT CTCATTCAAT
  GTAAGTAGTA GAAGCAGCTT CCTTTGATCA ACAAGTTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45099310	mCV22933085	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss145971404	ENSMUSSNP5296197	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32039117					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163899213 () rs orientation: forward

Symbol	Name	Function Class
Gm57120	predicted gene, 57120	within coordinates
Rr396477	regulatory region 396477	140 bp downstream
Rr396478	regulatory region 396478	550 bp upstream
Rr422139	regulatory region 422139	1987 bp distal
Rr422140	regulatory region 422140	within coordinates
Rr422141	regulatory region 422141	1604 bp proximal
Sell	selectin, lymphocyte	within coordinates