rs32039936 SNP Detail

Summary

• ID
  rs32039936
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13287324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTACAAATG AGAATGACAC ATACACTGTC ATTGTAAACA TGCAGTCACT TGACTCTCAG
  AGAACGCTTC CATTGAACTC TTGTTCTGTA GCGACTCATG GCTAGTTTCC ATTTAAATTA
  ATGAGTAGAC AAGAGAACTA ATGGTTAAAT CATACCCATA AATGTAACTG TCCATCCATG
  AGTGACTTTC TGCTGTCTAT CAGGTTGTGT GTATTCATGT GCCAGCTGCC AGAGCTAAGA
  TGGTGGAAAC AAAATATCAA TCCTCTCCCT GACTGTTAAA GTCTAGAGCA ACAGCCACCA
  M
  AAAAAAAAAA AAAAAAAAAA AAAAATCACA AACTTGAGTG TCCCAGTCCT GTAGCAGGAA
  TATTCTCCTC ATGGTGGACT TCAATGTAAC TATACCACAT TCCTGACCTC AGGTGTTCCC
  ACAGTAGGGG TACAGTAGGC ACCACTAGCC AGGACGCCAG CCACGTAGGC AGAGGCACAG
  CTCGCATGCA TCCCAGAGCA TGCAGCAGAG AGGTAAGAAA CACTGCCGTT TTCTTCACCT
  TTGCTTAGTG TACCGGCTTC CACGTCCACA TGGTTAGTAA CGACGGCTAT GCTTAACAAC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45099319	mCV22807561	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32039936					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13287324 () rs orientation: forward

Symbol	Name	Function Class
Ncoa2	nuclear receptor coactivator 2	within coordinates
Rr370880	regulatory region 370880	within coordinates
Tssr10984	transcription start site region 10984	1 bp upstream