rs32040114 SNP Detail

Summary

• ID
  rs32040114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126361057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGAGACAC TGTCCTGGGA CTCGCTCTGT AGACAAGGCT
  GACCTTGAAT TCATTCATCT GCCTGCCTCT GCCTCCCCAG CGCTGGGATT AAAGGCGTGC
  R
  CCACCAGTGT GTCTGCCTAA CAACTTGTTT CTATCAGGCA GACAAGCTTG GCAGCTTTGA
  GTCTAATGAC ATGCTCCTGA CGTGGGAAAA GATCCACTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45600416	mCV25174261	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	A
ss147409144	ENSMUSSNP1083551	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A		G
ss321300075	CHEV_4_126144508	CHEVERUD	SCREENING_POP	f	SNP						A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs32040114					SNP	G	G	A	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126361057 () rs orientation: forward

Symbol	Name	Function Class
Ago1	argonaute RISC catalytic subunit 1	within coordinates
Cpgi14821	CpG island 14821	552 bp proximal
Rr377145	regulatory region 377145	437 bp downstream
Rr398490	regulatory region 398490	1270 bp upstream
Rr599694	regulatory region 599694	485 bp distal
Rr599695	regulatory region 599695	within coordinates
Rr599696	regulatory region 599696	834 bp proximal
Rr599697	regulatory region 599697	1147 bp proximal
Rr599698	regulatory region 599698	1475 bp proximal
Tssr39001	transcription start site region 39001	1102 bp downstream
Tssr43383	transcription start site region 43383	1316 bp downstream
Tssr43384	transcription start site region 43384	1432 bp downstream